| Award | Category | Recipient | Result |
|---|---|---|---|
| 41st Metro Manila Film Festival[9] | Best Director | Erik Matti | Won |
| Best Actor | John Lloyd Cruz | Nominated | |
| Best Actress | Meryll Soriano | Nominated | |
| Best Supporting Actor | Tirso Cruz III | Won | |
| Best Child Performer | Krystal Brimner | Won | |
| Best Cinematography | Ber Cruz | Nominated | |
| Best Screenplay | Michiko Yamamoto | Nominated | |
| Best Original Story | Michiko Yamamoto and Erik Matti | Nominated | |
| Best Production Design | Ericson Navarro | Nominated | |
| Best Make-up Artist | Ryan Panaligan and Erika Racela | Won | |
| Best Original Theme Song | Tao | Won | |
| Best Musical Score | Erwin Romulo | Nominated | |
| Best Sound Engineering | Mikko Quizon | Nominated | |
| 32nd PMPC Star Awards for Movies[10] | |||
| Movie of the Year | Honor Thy Father | Nominated | |
| Movie Director of the Year | Erik Matti | Nominated | |
| Movie Actor of the Year | John Lloyd Cruz | Nominated | |
| Movie Actress of the Year | Meryll Soriano | Nominated | |
| Movie Supporting Actor of the Year | Tirso Cruz III | Won | |
| Danilo Fernandez | Nominated | ||
| Movie Child Performer of the Year | Krystal Brimner | Nominated | |
| Movie Screenwriter of the Year | Michiko Yamamoto | Won | |
| Movie Cinematographer of the Year | Ber Cruz | Won | |
| Movie Production Designer of the Year | Ericson Navarro | Nominated | |
| Movie Editor of the Year | Jay Halili | Nominated | |
| Movie Musical Scorer of the Year | Erwin Romulo | Nominated | |
| Movie Sound Engineer of the Year | Mikko Quizon | Nominated |
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