A central theme of the novel is the concept of justice, the imperfections of the justice system and the lack of a universal definition of justice. To David justice means the restoration of his inheritance, whereas for Alan it means the death of his enemy Colin Roy of Glenure.
Literary critic Leslie Fiedler has suggested that a unifying "mythic concept" in several of Stevenson's books, including Kidnapped, is what might be called the "Beloved Scoundrel", or the "Devil as Angel", "the beauty of evil".[6] The Rogue in this instance is of course Alan, "a rebel, a deserter, perhaps a murderer ... without a shred of Christian morality".[7] Good nevertheless triumphs over evil, as in David Balfour's situation.