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"Now I understand one of the important reasons for going to college and getting an education is to learn that the things you've believed in all your life aren't true, and that nothing is what it appears to be."
Charlie makes this statement is part as a reference to his innate belief in God, and the fact that he had never before questioned or heard His presence questioned. You'll need to answer the final part of this question from your own school experience.
Flowers for Algernon