"if ender usn't the one, if his peak military brilliance does not coincide with the arrival of our fleet ar the bugger homeworlds, then it doesn't really matter what our training method is or isn't"
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Answered by Aslan
I think it means that it doesn't really matter because the world as they know it would be over. THe military might or might not have got it right with Ender, but in the end there can only be one result; Ender has to be the one.